../../tmp/servers/virsirnadb/43560929
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1843 | 1 | attgaaggaatgtatggac | 19 | |
| X05690.1 | Coxsackievirus B4 complete genome | 6326 | ................... | 6344 | 100 |
| S76772.1 | polyprotein [Coxsackie B4 virus CB4, host=mice, E2, originally derive | 6327 | ................... | 6345 | 100 |
| AF311939.1 | Human coxsackievirus B4 strain E2 variant, complete genome | 6327 | ................... | 6345 | 100 |
| AY556057.1 | Enterovirus 74 strain USA/CA75-10213, complete genome | 6340 | ................... | 6358 | 100 |
| DQ480420.1 | Human coxsackievirus B4 strain Tuscany, complete genome | 6326 | ................... | 6344 | 100 |
| AF328683.1 | Human coxsackievirus B4 polyprotein-like gene, complete sequence | 6325 | _.................. | 6342 | 94 |
| X79047.1 | Echovirus type 12, prototype Travis wild type genome | 6354 | ............c...... | 6372 | 94 |
| X77708.1 | Echovirus type 12, prototype Travis complete RNA genome | 6354 | ............c...... | 6372 | 94 |
| FJ000001.1 | Human coxsackievirus B3 strain Fuyang19, complete genome | 6330 | .........g......... | 6348 | 94 |
| GQ141875.1 | Human coxsackievirus B3 strain Beijing0811, complete genome | 6332 | .........g......... | 6350 | 94 |
| X80059.1 | Echo Virus 11 genomic DNA | 6371 | _................._ | 6387 | 89 |
| DQ902712.1 | Human enterovirus 84 isolate CIV2003-10603, complete genome | 6356 | __................. | 6372 | 89 |
| M33854.1 | CXA3CG Coxsackievirus B3 (CVB3) complete genome | 6331 | _..a............... | 6348 | 89 |
| M88483.1 | CXAB3CG Coxsackievirus B3 mRNA, complete genome | 6332 | _..a............... | 6349 | 89 |
| AF162711.1 | Echovirus 30 strain Bastianni, complete genome | 6366 | ............c....._ | 6383 | 89 |
| AF029859.2 | Echovirus 1 (strain Farouk / ATCC VR-1038) polyprotein precursor, gen | 6330 | _...........c...... | 6347 | 89 |
| AF231763.1 | Coxsackievirus B3 strain 31-1-93, complete genome | 6332 | _..a............... | 6349 | 89 |
| AF231764.1 | Coxsackievirus B3 strain P, complete genome | 6332 | _..a............... | 6349 | 89 |
| AF231765.1 | Coxsackievirus B3 strain PD, complete genome | 6332 | _..a............... | 6349 | 89 |
| AF311938.1 | Human echovirus 30 strain Bastianni, complete genome | 6371 | ............c....._ | 6388 | 89 |
| AY186745.1 | Human coxsackievirus B1 clone pMP1.24 polyprotein gene, complete cds | 6303 | _...........c...... | 6320 | 89 |
| AY186746.1 | Human coxsackievirus B1 clone pMP1.23 polyprotein gene, complete cds | 6303 | _...........c...... | 6320 | 89 |
| AY186747.1 | Human coxsackievirus B1 clone pAMP2.17 polyprotein gene, complete cds | 6303 | _...........c...... | 6320 | 89 |
| AY186748.1 | Human coxsackievirus B1 clone pAMP2.22 polyprotein gene, complete cds | 6303 | _...........c...... | 6320 | 89 |
| AY673831.1 | Human coxsackievirus B3 strain GA, complete genome | 6333 | _.....a............ | 6350 | 89 |
| AY752945.1 | Human coxsackievirus B3 strain 0, complete genome | 6332 | _..a............... | 6349 | 89 |
| AY752946.1 | Human coxsackievirus B3 strain 20, complete genome | 6332 | _..a............... | 6349 | 89 |
| EF634316.1 | Human echovirus 11 strain D207, complete genome | 6364 | ............c....._ | 6381 | 89 |
| AB426610.1 | Human enterovirus 79 genomic RNA, complete genome, strain: NH95-0601 | 6357 | .........g........_ | 6374 | 89 |
| AY752944.2 | Human coxsackievirus B3 strain 28, complete genome | 6332 | _..a............... | 6349 | 89 |
| X92886.1 | Echovirus 9 (strain Barty), complete genome | 6383 | ......a..g......... | 6401 | 89 |
| AF230973.1 | AF230973 Enterovirus Yanbian 96-83csf, complete genome | 6331 | .........g..c...... | 6349 | 89 |
| AF230973.1 | AF230973 Enterovirus Yanbian 96-83csf, complete genome | 606 | .........t...______ | 618 | 63 |
| AF524866.1 | Human echovirus 9 strain Barty, complete genome | 6385 | ......a..g......... | 6403 | 89 |
| AF524867.1 | Human echovirus 9 isolate DM, complete genome | 6385 | .........g..c...... | 6403 | 89 |
| AY843308.1 | Human enterovirus 101 strain CIV03-10361, complete genome | 6376 | .........g..c...... | 6394 | 89 |
| HM031191.1 | Human echovirus 25 strain HN-2, complete genome | 6359 | ...a.....g......... | 6377 | 89 |
| HM185055.1 | Human echovirus 6 strain Echo6/Henan/116/2008, complete genome | 6350 | ...a.....g......... | 6368 | 89 |
| HM185056.1 | Human enterovirus B strain EVB/Henan/127/2008, complete genome | 6327 | ...a.....g......... | 6345 | 89 |
| X84981.1 | Echovirus 9 (strain Hill), complete genome | 6354 | __..........c...... | 6370 | 84 |
| AY302553.1 | Human echovirus 3 strain Morrisey complete genome | 6361 | __....a............ | 6377 | 84 |
| AJ849942.1 | Human echovirus 3 gene for polyprotein, genomic RNA, strain PicoBank/ | 6359 | _...........c....._ | 6375 | 84 |
| EF371880.2 | Human enterovirus B isolate SE-03-78616, complete genome | 6337 | __....a............ | 6353 | 84 |
| AY302551.1 | Human echovirus 27 strain Bacon complete genome | 6342 | .........g..c....._ | 6359 | 84 |
| AY843303.1 | Human enterovirus 85 strain BAN00-10353, complete genome | 6353 | _..a.....g......... | 6370 | 84 |
| AJ577589.1 | Human echovirus 11, isolate HUN-1108, complete virion genome | 6365 | __..........c....._ | 6380 | 78 |
| AJ577590.1 | Human echovirus 11, isolate FIN-0666, complete virion genome | 6365 | __..........c....._ | 6380 | 78 |
| HM777023.1 | Human echovirus 18 isolate Kor05-ECV18-054cn, complete genome | 6346 | __...g............_ | 6361 | 78 |
| AY843301.1 | Human enterovirus 83 strain USA/CA76-10392, complete genome | 6325 | .c....a..g......... | 6343 | 84 |
| FJ172447.1 | Human echovirus 4 strain AUS250G, complete genome | 6328 | __.a.....g......... | 6344 | 78 |
| FJ172447.1 | Human echovirus 4 strain AUS250G, complete genome | 604 | .........t...______ | 616 | 63 |
| AY302549.1 | Human echovirus 25 strain JV-4 complete genome | 6357 | .c.t..a..........._ | 6374 | 78 |
| AY302546.1 | Human echovirus 20 strain JV-1 complete genome | 6327 | __.a..a..g......... | 6343 | 73 |
| AY843300.1 | Human enterovirus 82 strain USA/CA64-10390, complete genome | 603 | .........t...______ | 615 | 63 |
| AF326764.2 | Simian enterovirus 46 strain OM22 (P15), complete genome | 922 | ..........g..______ | 934 | 63 |
| AM040035.1 | Human poliovirus 2 complete virion genome, isolate PV2/4568-1/ISR98 | 2413 | ...........________ | 2423 | 57 |
| U22522.1 | ETU22522 Human enterovirus 71 polyprotein gene, complete cds | 6735 | ...........________ | 6745 | 57 |
| FJ606450.1 | Human enterovirus 71 strain BJ08-Z025-5, complete genome | 6731 | ...........________ | 6741 | 57 |
| FJ607337.1 | Human enterovirus 71 strain 121/SHENZHEN/08/China/HFMD Fatal/2008, co | 6730 | ...........________ | 6740 | 57 |
| AB575923.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 202 | 6678 | ...........________ | 6688 | 57 |
| AB575927.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 113 | 6671 | ...........________ | 6681 | 57 |
| AB575928.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 115 | 6672 | ...........________ | 6682 | 57 |
| HQ423142.1 | Human enterovirus 71 strain KMM/09, complete genome | 6731 | ...........________ | 6741 | 57 |
| HQ423143.1 | Human enterovirus 71 strain KM186/09, complete genome | 6731 | ...........________ | 6741 | 57 |